Genotype vs Phenotype

Genotype is the set of alleles an organism carries for a gene (e.g. Tt); phenotype is the observable characteristic that genotype produces (e.g. tall). The same phenotype can come from more than one genotype.

Key definitions

  • Gene: a section of a chromosome that controls one characteristic.
  • Allele: an alternative form of a gene (e.g. T for tall, t for short).
  • Genotype: the combination of alleles an organism has for a gene, written as a letter pair (e.g. TT, Tt, tt).
  • Phenotype: the physical or observable characteristic produced by the genotype (e.g. tall or short).

Homozygous and heterozygous

A homozygous genotype has two identical alleles: homozygous dominant (TT) or homozygous recessive (tt). A heterozygous genotype has two different alleles (Tt).

Homozygous individuals are also called true-breeding, because all their gametes carry the same allele, so their offspring's genotype for that gene is predictable.

Dominant and recessive alleles

A dominant allele (shown with a capital letter, e.g. T) produces its phenotype even when only one copy is present. A recessive allele (lower case, e.g. t) only produces its phenotype when two copies are present, because the dominant allele masks it in a heterozygote.

T = tall allele (dominant), t = short allele (recessive) in pea plants.
GenotypeAlleles presentPhenotype
TTHomozygous dominantTall
TtHeterozygousTall
ttHomozygous recessiveShort

Why one phenotype can hide two genotypes

TT and Tt both look tall, so phenotype alone cannot tell you the genotype of a dominant-looking individual. A test cross (crossing with a homozygous recessive) is used to find out which genotype it actually has.

Worked problem 1 (easy): a homozygous cross

Question. In pea plants, the allele for tall (T) is dominant to the allele for short (t). A homozygous tall plant is crossed with a short plant.

State the genotype and phenotype of the F1 offspring.

Key. T = allele for tall (dominant), t = allele for short (recessive). Parents: tall (TT) x short (tt).

Gametes: T from the tall parent, t from the short parent.

Every offspring is Tt. Genotype: all Tt (heterozygous). Phenotype: all tall. The short phenotype disappears in the F1 even though the t allele is still carried.
T
tTt

Worked problem 2 (medium): a test cross

Question. A tall pea plant could be TT or Tt. It is crossed with a short plant (tt) to find out which.

Show the cross for the case where the tall plant is heterozygous, and state how the result reveals the genotype.

Key. Parents: tall (Tt) x short (tt). Gametes: T and t from the tall plant, t from the short plant.

Offspring: 1 Tt (tall) : 1 tt (short), a 1:1 ratio. Had the tall parent been TT, every offspring would be tall; a 1 tall : 1 short result therefore shows the tall parent is heterozygous (Tt).
Tt
tTttt

Worked problem 3 (SPM-level): working backwards from the offspring

Question. In rabbits, black coat (B) is dominant to brown (b). Two black rabbits are mated and one of the offspring is brown.

Determine the genotypes of both parents and the expected phenotype ratio of their offspring.

Answer. The brown offspring is bb, so it received one b allele from each parent. Both black parents must therefore carry a b allele, making each of them Bb (heterozygous).

Parents: black (Bb) x black (Bb); gametes B and b from each.

Genotype ratio 1 BB : 2 Bb : 1 bb. Phenotype ratio 3 black : 1 brown. Three of the four genotypes look black, which is why a single brown offspring proves both parents are heterozygous.
Bb
BBBBb
bBbbb

Practice problems

  1. In pea plants, round seed (R) is dominant to wrinkled seed (r). State all the possible genotypes of a round-seeded plant.
  2. A purple-flowered plant is crossed with a white-flowered plant (pp), where purple (P) is dominant. All the offspring are purple. State the genotype of the purple parent and explain your reasoning.
  3. Explain how a test cross can reveal whether a tall pea plant is homozygous dominant or heterozygous.

Answers to the practice problems

Common mistakes

Source:SRC-DSKP-EN

Frequently asked questions

What is the difference between genotype and phenotype?
Genotype is the pair of alleles an organism carries for a gene, written as letters such as Tt. Phenotype is the physical characteristic that genotype produces, such as being tall. Genotype is the genetic instruction; phenotype is what you actually observe.
Can two organisms with the same phenotype have different genotypes?
Yes. If a characteristic is controlled by one dominant and one recessive allele, both TT and Tt individuals show the dominant phenotype even though their genotypes differ. Only a tt individual shows the recessive phenotype, so a dominant phenotype is genotypically ambiguous without further testing.
What does homozygous mean?
Homozygous means an organism carries two identical alleles for a gene, either two dominant alleles (homozygous dominant, TT) or two recessive alleles (homozygous recessive, tt). Because both alleles are the same, all of its gametes carry that one allele for the gene.

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